Start menu folder and Program folder recreated in wrong place

Hi,
Thought I'd see whether this was successful in restoring a small simple utility - Aquasnap.

Unfortunately it failed to recreate the start menu folder and the program folder in the original places. The restored program ran.. but...

What did I do?
1. Aquasnap was installed
(Start menu at
C:\Users\DavidAdmin\AppData\Roaming\Microsoft\Windows\Start Menu\Programs\Vista Gui Utilities\AquaSnap
Program folder at
D:\Vista GUI\Aquasnap)

(the default "C:\Program Files" is replaced with D:\ in the registry)

2. I ran PickmeApp and captured Aquasnap.

3. I uninstalled Aquasnap.

4. PickmeApp was still running. I restored Aquasnap.

5. Inspecting the start menu, I found a folder in the root of the start menu for Aquasnap at
C:\ProgramData\Microsoft\Windows\Start Menu\Programs\AquaSnap
not at
C:\Users\DavidAdmin\AppData\Roaming\Microsoft\Windows\Start Menu\Programs\Vista Gui Utilities\AquaSnap

6. The program folder was now
D:\Utilities\Tray tools, which is actually a folder for an entirely different program.

Could you tell me how to avoid this and obtain a correct outcome, with the start menu folder and program folder in the right place?

Vista 32 bit. English.

Thanks! dalchina

(Previously I've used SoftRescue (which functions somewhat similarly) and PCmover).